Differential expression using kernel-based score test

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Documentation for package ‘cytoKernel’ version 1.10.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cytoHDBMW	Example of processed dimensionally reduced flow cytometry (marker median intensities) Bodenmiller_BCR_XL_flowSet() expression dataset from HDCytoData Bioconductor data package.
CytoK	CytoK
CytoK-class	the CytoK class
CytoKalpha	Generic function that returns the CytoK level of significance (alpha) Given a CytoK object, this function returns the CytoK alpha
CytoKalpha-method	Generic function that returns the CytoK level of significance (alpha) Given a CytoK object, this function returns the CytoK alpha
CytoKData	Generic function that returns the CytoK Data
CytoKData-method	Generic function that returns the CytoK Data
CytoKDEData	Differentially expressed data by cytoKernel
CytoKDEfeatures	Generic function that returns the CytoK Differentially Expressed (DE) features Given a CytoK object, this function returns the CytoK DE features
CytoKDEfeatures-method	Generic function that returns the CytoK Differentially Expressed (DE) features Given a CytoK object, this function returns the CytoK DE features
CytoKFeatures	Generic function that returns the CytoK features
CytoKFeatures-method	Generic function that returns the CytoK features
CytoKFeaturesOrdered	Generic function that returns the ordered CytoK features
CytoKFeaturesOrdered-method	Generic function that returns the ordered CytoK features
CytoKFeatureVars	Generic function that returns the CytoK Feature Vars
CytoKFeatureVars-method	Generic function that returns the CytoK Feature Vars
CytoKProc	CytoKProc
data.frameORSummarizedExperiment-class	S4 Class union
plotCytoK	Heatmap of the differentially expressed data with features on the rows and samples (group factors) as the columns from 'CytoK' and 'CytoKDEData' function.
vectorORNull-class	S4 Class union