find influential TF and Target based on multi-omics data
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Documentation for package ‘FindIT2’ version 1.10.0
Help Pages
| ATAC_normCount | ATAC normCount of E50h-72h in Chr5 |
| calcRP_coverage | calcRP_coverage |
| calcRP_region | calcRP_region |
| calcRP_TFHit | calcRP_TFHit |
| enhancerPromoterCor | enhancerPromoterCor |
| findIT_enrichFisher | findI(nfluential)T(F)_enrichFisher |
| findIT_enrichWilcox | findIT_enrichWilcox |
| findIT_MARA | findIT_MARA |
| findIT_regionRP | findI(nfluential)T(F)_regionRP |
| findIT_TFHit | findI(nfluential)T(F)_TFHit |
| findIT_TTPair | findI(nfluential)T(F)_T(F)T(arget)Pair |
| getAssocPairNumber | getAssocPairNumber |
| integrate_ChIP_RNA | integrate_ChIP_RNA |
| integrate_replicates | integrate_replicates |
| jaccard_findIT_enrichFisher | jaccard_findIT_enrichFisher |
| jaccard_findIT_TTpair | jaccard_findIT_TTpair |
| loadPeakFile | loadPeakFile |
| mm_geneBound | mm_geneBound |
| mm_geneScan | mm_geneScan |
| mm_nearestGene | mm_nearestGene |
| peakGeneCor | peakGeneCor |
| plot_annoDistance | plot_annoDistance |
| plot_peakGeneAlias_summary | plot_peakGeneAlias_summary |
| plot_peakGeneCor | plot_peakGeneCor |
| RNADiff_LEC2_GR | RNA diff result from LEC2_GR VS LEC2_DMSO |
| RNA_normCount | RNA normCount of E50h-72h in Chr5 |
| test_featureSet | test_featureSet |
| test_geneSet | test_geneSet |
| TF_target_database | TF-target database |