Queries the Human Cell Atlas
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Documentation for package ‘CuratedAtlasQueryR’ version 1.2.0
Help Pages
| DATABASE_URL | URL pointing to the full metadata file |
| get_metadata | Gets the Curated Atlas metadata as a data frame. |
| get_seurat | Given a data frame of HCA metadata, returns a Seurat object corresponding to the samples in that data frame |
| get_SingleCellExperiment | Gets a SingleCellExperiment from curated metadata |
| get_single_cell_experiment | Gets a SingleCellExperiment from curated metadata |
| get_unharmonised_dataset | Returns unharmonised metadata for selected datasets. |
| get_unharmonised_metadata | Returns unharmonised metadata for a metadata query |
| SAMPLE_DATABASE_URL | URL pointing to the sample metadata file, which is smaller and for test, demonstration, and vignette purposes only |