scRNAseqApp

DOI: 10.18129/B9.bioc.scRNAseqApp  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see scRNAseqApp.

A single-cell RNAseq Shiny app-package

Bioconductor version: 3.17

scRNAseqApp is a Shiny app package that allows users to visualize single cell data interactively. It was modified from ShinyCell and repackaged to a tool to show multiple data. It can visulize the data with multiple information side by side.

Author: Jianhong Ou [aut, cre]

Maintainer: Jianhong Ou <jianhong.ou at duke.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scRNAseqApp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scRNAseqApp")

 

HTML	R Script	scRNAseqApp Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	RNASeq, SingleCell, Software, Visualization
Version	1.0.1
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	GPL-3
Depends	R (>= 4.3.0)
Imports	bibtex, bslib, circlize, ComplexHeatmap, data.table, DT, GenomicRanges, GenomeInfoDb, ggdendro, ggforce, ggplot2, ggrepel, ggridges, grDevices, grid, gridExtra, hdf5r, htmltools, IRanges, jsonlite, magrittr, methods, patchwork, plotly, RColorBrewer, RefManageR, Rsamtools, rtracklayer, S4Vectors, scales, scrypt, Seurat, SeuratObject, shiny, shinyhelper, shinymanager, slingshot, SingleCellExperiment, stats, tools, xfun, xml2, utils
LinkingTo
Suggests	rmarkdown, knitr, testthat, BiocStyle
SystemRequirements
Enhances	celldex, future, SingleR, SummarizedExperiment, tricycle
URL	https://github.com/jianhong/scRNAseqApp
BugReports	https://github.com/jianhong/scRNAseqApp/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scRNAseqApp_1.0.1.tar.gz
Windows Binary	scRNAseqApp_1.0.1.zip (64-bit only)
macOS Binary (x86_64)	scRNAseqApp_1.0.1.tgz
macOS Binary (arm64)	scRNAseqApp_1.0.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/scRNAseqApp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scRNAseqApp
Bioc Package Browser	https://code.bioconductor.org/browse/scRNAseqApp/
Package Short Url	https://bioconductor.org/packages/scRNAseqApp/
Package Downloads Report	Download Stats