planet

DOI: 10.18129/B9.bioc.planet  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see planet.

Placental DNA methylation analysis tools

Bioconductor version: 3.17

This package contains R functions to infer additional biological variables to supplemental DNA methylation analysis of placental data. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data. The package comes with an example processed placental dataset.

Author: Victor Yuan [aut, cre], Wendy P. Robinson [ctb]

Maintainer: Victor Yuan <victor.2wy at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("planet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("planet")

 

HTML	R Script	planet
PDF		Reference Manual
Text		NEWS

Details

biocViews	CpGIsland, DNAMethylation, DifferentialMethylation, Epigenetics, MethylationArray, Microarray, Software
Version	1.8.0
In Bioconductor since	BioC 3.13 (R-4.1) (2.5 years)
License	GPL-2
Depends	R (>= 4.0)
Imports	methods, tibble, magrittr, dplyr
LinkingTo
Suggests	ggplot2, testthat, tidyr, scales, minfi, EpiDISH, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://victor.rbind.io/planet http://github.com/wvictor14/planet
BugReports	http://github.com/wvictor14/planet/issues
Depends On Me
Imports Me	methylclock
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	planet_1.8.0.tar.gz
Windows Binary	planet_1.8.0.zip
macOS Binary (x86_64)	planet_1.8.0.tgz
macOS Binary (arm64)	planet_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/planet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/planet
Bioc Package Browser	https://code.bioconductor.org/browse/planet/
Package Short Url	https://bioconductor.org/packages/planet/
Package Downloads Report	Download Stats