eds

DOI: 10.18129/B9.bioc.eds  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see eds.

eds: Low-level reader for Alevin EDS format

Bioconductor version: 3.17

This packages provides a single function, readEDS. This is a low-level utility for reading in Alevin EDS format into R. This function is not designed for end-users but instead the package is predominantly for simplifying package dependency graph for other Bioconductor packages.

Author: Avi Srivastava [aut, cre], Michael Love [aut, ctb]

Maintainer: Avi Srivastava <asrivastava at cs.stonybrook.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("eds")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eds")

 

HTML	R Script	eds: Low-level reader function for Alevin EDS format
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, RNASeq, Sequencing, SingleCell, Software
Version	1.2.0
In Bioconductor since	BioC 3.16 (R-4.2) (1 year)
License	GPL-2
Depends	Matrix
Imports	Rcpp
LinkingTo	Rcpp
Suggests	knitr, tximportData, testthat (>= 3.0.0)
SystemRequirements	C++11
Enhances
URL	https://github.com/mikelove/eds
Depends On Me
Imports Me	singleCellTK
Suggests Me	tximport
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	eds_1.2.0.tar.gz
Windows Binary	eds_1.2.0.zip
macOS Binary (x86_64)	eds_1.2.0.tgz
macOS Binary (arm64)	eds_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/eds
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/eds
Bioc Package Browser	https://code.bioconductor.org/browse/eds/
Package Short Url	https://bioconductor.org/packages/eds/
Package Downloads Report	Download Stats