SISPA

DOI: 10.18129/B9.bioc.SISPA  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see SISPA.

SISPA: Method for Sample Integrated Set Profile Analysis

Bioconductor version: 3.17

Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SISPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SISPA")

 

HTML	R Script	SISPA:Method for Sample Integrated Set Profile Analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneSetEnrichment, GenomeWideAssociation, Software
Version	1.30.0
In Bioconductor since	BioC 3.2 (R-3.2) (8 years)
License	GPL-2
Depends	R (>= 3.5), genefilter, GSVA, changepoint
Imports	data.table, plyr, ggplot2
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SISPA_1.30.0.tar.gz
Windows Binary	SISPA_1.30.0.zip (64-bit only)
macOS Binary (x86_64)	SISPA_1.30.0.tgz
macOS Binary (arm64)	SISPA_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SISPA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SISPA
Bioc Package Browser	https://code.bioconductor.org/browse/SISPA/
Package Short Url	https://bioconductor.org/packages/SISPA/
Package Downloads Report	Download Stats