RBioFormats

DOI: 10.18129/B9.bioc.RBioFormats  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see RBioFormats.

R interface to Bio-Formats

Bioconductor version: 3.17

An R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.

Author: Andrzej Oleś [aut, cre] , John Lee [ctb]

Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RBioFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RBioFormats")

 

HTML	R Script	RBioFormats: an R interface to the Bio-Formats library
PDF		Reference Manual

Details

biocViews	DataImport, Software
Version	1.0.0
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	GPL-3
Depends
Imports	EBImage, methods, rJava (>= 0.9-6), S4Vectors, stats
LinkingTo
Suggests	BiocStyle, knitr, testthat, xml2
SystemRequirements	Java (>= 1.7)
Enhances
URL	https://github.com/aoles/RBioFormats
BugReports	https://github.com/aoles/RBioFormats/issues
Depends On Me
Imports Me	SpatialOmicsOverlay
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RBioFormats_1.0.0.tar.gz
Windows Binary	RBioFormats_1.0.0.zip
macOS Binary (x86_64)	RBioFormats_1.0.0.tgz
macOS Binary (arm64)	RBioFormats_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RBioFormats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RBioFormats
Bioc Package Browser	https://code.bioconductor.org/browse/RBioFormats/
Package Short Url	https://bioconductor.org/packages/RBioFormats/
Package Downloads Report	Download Stats