PrecisionTrialDrawer

DOI: 10.18129/B9.bioc.PrecisionTrialDrawer  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PrecisionTrialDrawer.

A Tool to Analyze and Design NGS Based Custom Gene Panels

Bioconductor version: 3.17

A suite of methods to design umbrella and basket trials for precision oncology.

Author: Giorgio Melloni, Alessandro Guida, Luca Mazzarella

Maintainer: Giorgio Melloni <melloni.giorgio at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PrecisionTrialDrawer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DataImport, GeneExpression, Sequencing, Software, SomaticMutation, WholeGenome
Version	1.16.0
In Bioconductor since	BioC 3.9 (R-3.6) (4.5 years)
License	GPL-3
Depends	R (>= 3.6)
Imports	graphics, grDevices, stats, utils, methods, cBioPortalData, parallel, stringr, reshape2, data.table, RColorBrewer, BiocParallel, magrittr, biomaRt, XML, httr, jsonlite, ggplot2, ggrepel, grid, S4Vectors, IRanges, GenomicRanges, LowMACAAnnotation, googleVis, shiny, shinyBS, DT, brglm, matrixStats
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, dplyr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/PrecisionTrialDrawer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PrecisionTrialDrawer
Package Short Url	https://bioconductor.org/packages/PrecisionTrialDrawer/
Package Downloads Report	Download Stats