CTdata

DOI: 10.18129/B9.bioc.CTdata  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see CTdata.

Data companion to CTexploreR

Bioconductor version: 3.17

Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.

Author: Axelle Loriot [aut] , Julie Devis [aut] , Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CTdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CTdata")

 

HTML	R Script	Cancer Testis Datasets
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Epigenetics, ExperimentHubSoftware, GeneExpression, Software, Transcriptomics
Version	1.0.2
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.2)
Imports	ExperimentHub, utils
LinkingTo
Suggests	testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment
SystemRequirements
Enhances
URL
BugReports	https://github.com/UCLouvain-CBIO/CTdata/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CTdata_1.0.2.tar.gz
Windows Binary	CTdata_1.0.2.zip
macOS Binary (x86_64)	CTdata_1.0.2.tgz
macOS Binary (arm64)	CTdata_1.0.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CTdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CTdata
Bioc Package Browser	https://code.bioconductor.org/browse/CTdata/
Package Short Url	https://bioconductor.org/packages/CTdata/
Package Downloads Report	Download Stats