Direct Access to Orbitrap Data and Beyond

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Documentation for package ‘rawrr’ version 1.8.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.checkDllInMonoPath	Check if a file is contained in the environment variable 'MONO_PATH'.
.thermofisherlsmsUrl	URL for Thermo Fisher .NET assemblies
auc.rawrrChromatogram	deriving area under the curve (AUC)
basePeak	Base peak of a spectrum
buildRawrrExe	Build 'rawrr.exe' console application.
dependentScan	Retrieve dependent scan(s) of a scan listed in scan index
faimsVoltageOn	Is FAIMS Voltage on?
filter	derive scans number which match a specified filter
installRawFileReaderDLLs	Download and install the New RawFileReader from Thermo Fisher Scientific .Net assemblies i
installRawrrExe	Download and install the 'rawrr.exe' console application
is.rawrrChromatogram	Function to check if an object is an instance of class 'rawrrChromatogram'
is.rawrrSpectrum	Function to check if an object is an instance of class 'rawrrSpectrum'
is.rawrrSpectrumSet	Function to check if an object is an instance of class 'rawrrSpectrumSet'
makeAccessor	Make accessor function for key value pair returned by RawFileReader
massRange	Acquisition/scan range of spectrum
masterScan	Retrieve master scan of scan listed in scan index
new_rawrrSpectrum	Create instances of class 'rawrrSpectrum'
plot.rawrrChromatogram	Plot 'rawrrChromatogram' objects
plot.rawrrChromatogramSet	Plot 'rawrrChromatogramSet' objects
plot.rawrrSpectrum	Basic plotting function for instances of 'rawrrSpectrum'
print.rawrrSpectrum	Print method imitate the look and feel of Thermo Fisher Scientific FreeStyle's output
rawrr	Reads spectral data from a raw file.
rawrr.exe	Download and install the 'rawrr.exe' console application
rawrrAssemblyPath	Derives the path where all .NET assemblies are stored.
rawrrSpectrum	Create 'rawrrSpectrum' objects
readChromatogram	Extracts chromatographic data from a raw file.
readFileHeader	read file header Information
readIndex	Read scan index
readSpectrum	Reads spectral data from a raw file.
readTrailer	Read and extract scan trailer from TFS raw files.
sample.raw	A small file size 'sample.raw' BLOB
sampleFilePath	A small file size 'sample.raw' BLOB
scanNumber	Accessor function for scan number of 'rawrrSpectrum' objects
summary.rawrrChromatogram	Text summary of chromatogram
summary.rawrrSpectrum	Basic summary function
Thermo	Download and install the New RawFileReader from Thermo Fisher Scientific .Net assemblies i
ThermoFisher	Download and install the New RawFileReader from Thermo Fisher Scientific .Net assemblies i
ThermoFisherScientific	Download and install the New RawFileReader from Thermo Fisher Scientific .Net assemblies i
tic	Total ion current of a spectrum
validate_rawrrIndex	Validate output of the readIndex function
validate_rawrrSpectrum	Validate instance of class rawrrSpectrum