Exploring, analyzing and visualizing functions utilizing the pcxnData package

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Documentation for package ‘pcxn’ version 2.22.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

Introduction to pcxn	Exploring, analyzing and visualizing functions utilizing the pcxnData package
pcxn	Exploring, analyzing and visualizing functions utilizing the pcxnData package
pcxn-class	A pcxn object produced by pcxn_explore() or pcxn_analyze(). It holds the corresponding analysis, the data produced by the analysis and the geneset groups involved.
pcxn_analyze	Discover correlated pathway/gene sets of a single pathway/gene set or correlation relationships among multiple pathways/gene sets.
pcxn_explore	Discover correlated pathway/gene sets of a single pathway/gene set or correlation relationships among multiple pathways/gene sets.
pcxn_gene_members	Acquire the gene members of a pathway from the pcxnData package
pcxn_heatmap	Draw a heatmap of a pcxn object
pcxn_network	Create a network of a pcxn object