Analysis of patient-derived xenograft (PDX) data

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Documentation for package ‘Xeva’ version 1.16.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ABC	area between curves Computes the area between two time-volume curves.
addExperimentalDesign	Add a new experimental design
addExperimentalDesign-method	Add a new experimental design
angle	compute angle Computes the angle between two time-volume curves.
AUC	area under the curve 'AUC' Returns area under the curve
batchInfo	Get batch information
batchInfo-method	Get batch information
brca	PDXE breast cancer dataset
createXevaSet	XevaSet constructor
dosePlot	plot dose data
downloadXevaSet	Download a XevaSet object or table of available XevaSet objects
drugInform	Get drug information Get the drug information slot from a XevaSet object.
drugInform-method	Get drug information Get the drug information slot from a XevaSet object.
drugSensitivitySig	get drug sensitivity values
getExperiment	Get PDX experiment data
getExperiment-method	Get PDX experiment data
getMolecularProfiles	Get molecular profiles from a XevaSet object
lmm	linear mixed model
modelInfo	modelInfo Generic Generic for modelInfo method
modelInfo-method	modelInfo Generic Generic for modelInfo method
mRECIST	Computes the mRECIST
PDXMI	PDX-MI data
plotBatch	Plot batch data
plotmRECIST	To plot mRECIST values
plotPDX	Plot batch data
print.batchResponse	Print the batch response
print.modelResponse	Print the model response
print.pdxBatch	Print the pdx batch
repdx	Example PDX dataset
response	compute PDX response
selectModelIds	To select model IDs based on drug name and/or tissue type.
selectModelIds-method	To select model IDs based on drug name and/or tissue type.
sensitivity	Get sensitivity for an Xeva object
setResponse	set PDX response
slope	Computes slope
subsetXeva	Subset Xeva object.
summarizeMolecularProfiles	Summarize molecular profiles
summarizeResponse	Summarize Response of PDXs
TGI	tumor growth inhibition (TGI) Computes the tumor growth inhibition (TGI) between two time-volume curves
waterfall	waterfall plot Creates waterfall plot for a given drug.