This Package Discovers Directionality in Time and Pseudo-times
Series of Gene Expression Patterns
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Documentation for package ‘TrajectoryGeometry’ version 1.8.0
Help Pages
| analyseBranchPoint | Analyse branch point. |
| analyseSingleCellTrajectory | Analyse a single cell trajectory. |
| chol_answers | chol_answers |
| chol_attributes | chol_attributes |
| chol_branch_point_results | chol_branch_point_results |
| chol_pseudo_time | chol_pseudo_time |
| chol_pseudo_time_normalised | chol_pseudo_time_normalised |
| circleOnTheUnitSphere | Circle on the unit sphere |
| crooked_path | Crooked path |
| crooked_path_center | Crooked path center |
| crooked_path_projection | Crooked path projection |
| crooked_path_radius | Crooked path radius |
| distanceBetweenTrajectories | Get distances between trajectories. |
| findSphereClusterCenter | Find a center for points on the unit sphere |
| findSphericalDistance | Find the spherical distance from a given point to a set of points. |
| generateRandomPaths | Produce random paths modeled on a given path |
| generateRandomUnitVector | Generate random unit vector. |
| getDistanceDataForPaths | Produce distance statistics for random paths |
| getSphericalData | This is a simplified wrapper for pathToSphericalData |
| getStepLengths | Find the step lengths: |
| hep_answers | hep_answers |
| hep_attributes | hep_attributes |
| hep_pseudo_time | hep_pseudo_time |
| hep_pseudo_time_normalised | hep_pseudo_time_normalised |
| orthonormalBasis | Find an orthonormal basis in dimension 3 |
| oscillation | Oscillation |
| pathProgression | Measure a path's progression |
| pathToSphericalData | Find the spherical data for a given path |
| plotPathProjectionCenterAndCircle | Plot a path, its projection, its center and its circle |
| projectPathToSphere | Project a path onto the unit sphere |
| samplePath | Sample a path from single cell data |
| single_cell_matrix | single_cell_matrix |
| straight_path | Straight path |
| straight_path_center | Straight path center |
| straight_path_projection | Straight path projection |
| straight_path_radius | Straight path radius |
| testPathForDirectionality | Test a path for directionality |
| visualiseBranchPointStats | Visualise Branch Point Stats |
| visualiseTrajectoryStats | Visualise Trajectory Stats |