RESOLVE: An R package for the efficient analysis of mutational
signatures from cancer genomes
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Documentation for package ‘RESOLVE’ version 1.2.0
Help Pages
| RESOLVE-package | An R package for the efficient analysis of mutational signatures from cancer genomes. |
| background | Germline replication error |
| background2 | COSMIC replication error |
| cn_example_reduced | A reduced version of the copy number data for 5 TCGA samples in the format compatible with the import function |
| getCNCounts | getCNCounts |
| getIDCounts | getIDCounts |
| getMNVCounts | getMNVCounts |
| getSBSCounts | getSBSCounts |
| groupsCNPlot | groupsCNPlot |
| groupsCXPlot | groupsCXPlot |
| groupsIDPlot | groupsIDPlot |
| groupsMNVPlot | groupsMNVPlot |
| groupsSBSPlot | groupsSBSPlot |
| id_example_reduced | A reduced version of the indel data for 3 samples in the format compatible with the import function |
| patients | Point mutations for 560 breast tumors |
| patientsCNPlot | patientsCNPlot |
| patientsCXPlot | patientsCXPlot |
| patientsIDPlot | patientsIDPlot |
| patientsMNVPlot | patientsMNVPlot |
| patientsSBSPlot | patientsSBSPlot |
| plot_data_examples | List data structure to run examples |
| RESOLVE | An R package for the efficient analysis of mutational signatures from cancer genomes. |
| signaturesAssignment | signaturesAssignment |
| signaturesCNPlot | signaturesCNPlot |
| signaturesCV | signaturesCV |
| signaturesCXPlot | signaturesCXPlot |
| signaturesDecomposition | signaturesDecomposition |
| signaturesIDPlot | signaturesIDPlot |
| signaturesMNVPlot | signaturesMNVPlot |
| signaturesSBSPlot | signaturesSBSPlot |
| signaturesSignificance | signaturesSignificance |
| ssm560_reduced | A reduced version of the point mutations for 560 breast tumors in the format compatible with the import function |