$-method | 'HiCExperiment' S4 class |
$<--method | 'HiCExperiment' S4 class |
AggrHiCExperiment | 'AggrHiCExperiment' S4 class |
AggrHiCExperiment-class | 'AggrHiCExperiment' S4 class |
anchors-method | 'HiCExperiment' S4 class |
as | Coercing functions |
as.data.frame-method | Coercing functions |
as.matrix-method | Coercing functions |
availableChromosomes-method | HiCExperiment import methods |
availableResolutions-method | HiCExperiment import methods |
bins-method | 'HiCExperiment' S4 class |
centros_yeast | Example datasets provided in 'HiCExperiment' & 'HiContactsData' |
cis-method | 'HiCExperiment' S4 class |
cm2matrix | Coercing functions |
coerce-method | Coercing functions |
ContactsFile | 'ContactsFile' S4 class |
ContactsFile-class | 'ContactsFile' S4 class |
ContactsFile-methods | 'ContactsFile' S4 class |
contacts_yeast | Example datasets provided in 'HiCExperiment' & 'HiContactsData' |
contacts_yeast_eco1 | Example datasets provided in 'HiCExperiment' & 'HiContactsData' |
CoolFile | 'CoolFile' S4 class |
CoolFile-class | 'CoolFile' S4 class |
CoolFile-methods | 'CoolFile' S4 class |
data | Example datasets provided in 'HiCExperiment' & 'HiContactsData' |
df2gi | Coercing functions |
fileName-method | 'HiCExperiment' S4 class |
focus-method | 'HiCExperiment' S4 class |
focus<--method | 'HiCExperiment' S4 class |
gi2cm | Coercing functions |
HiCExperiment | 'HiCExperiment' S4 class |
HiCExperiment-class | 'HiCExperiment' S4 class |
HicFile | 'HicFile' S4 class |
HicFile-class | 'HicFile' S4 class |
HicFile-methods | 'HicFile' S4 class |
HicproFile | 'HicproFile' S4 class |
HicproFile-class | 'HicproFile' S4 class |
HicproFile-methods | 'HicproFile' S4 class |
import | HiCExperiment import methods |
import-method | HiCExperiment import methods |
import-methods | HiCExperiment import methods |
interactions-method | 'HiCExperiment' S4 class |
interactions<--method | 'HiCExperiment' S4 class |
length-method | 'HiCExperiment' S4 class |
makeHiCExperimentFromGInteractions | 'HiCExperiment' S4 class |
McoolFile-class | 'CoolFile' S4 class |
metadata<--method | 'ContactsFile' S4 class |
metadata<--method | 'HiCExperiment' S4 class |
PairsFile | 'PairsFile' S4 class |
PairsFile-class | 'PairsFile' S4 class |
pairsFile-method | 'ContactsFile' S4 class |
pairsFile-method | 'HiCExperiment' S4 class |
pairsFile-method | 'PairsFile' S4 class |
pairsFile<--method | 'HiCExperiment' S4 class |
refocus-method | 'HiCExperiment' S4 class |
regions-method | 'HiCExperiment' S4 class |
resolution-method | 'ContactsFile' S4 class |
resolution-method | 'HiCExperiment' S4 class |
resolutions-method | 'HiCExperiment' S4 class |
scores-method | 'HiCExperiment' S4 class |
scores<--method | 'HiCExperiment' S4 class |
seqinfo-method | 'HiCExperiment' S4 class |
show-method | 'AggrHiCExperiment' S4 class |
show-method | 'CoolFile' S4 class |
show-method | 'HiCExperiment' S4 class |
show-method | 'HicFile' S4 class |
show-method | 'HicproFile' S4 class |
slices-method | 'AggrHiCExperiment' S4 class |
subsetByOverlaps-method | 'HiCExperiment' S4 class |
topologicalFeatures-method | 'HiCExperiment' S4 class |
topologicalFeatures<--method | 'HiCExperiment' S4 class |
trans-method | 'HiCExperiment' S4 class |
zoom-method | 'HiCExperiment' S4 class |
[-method | 'HiCExperiment' S4 class |