Annotate cell types for scRNA-seq data

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Documentation for package ‘EasyCellType’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cellmarker_tissue	Tissues in CellMarker database.
clustermole_tissue	Tissues in Clustermole database.
coremarkers	Title Summarize markers contirbuting to the cell type annotation
easyct	Annotate cell types for scRNA-seq data
gene_pbmc	Differential expressed marker genes in 9 clusters.
mapsymbol	Title Convert gene symbol to Entrez ID
panglao_tissue	Tissues in Panglao database.
pbmc_data	Peripheral Blood Mononuclear Cells (PBMC) data.
plot_bar	Create bar plots for each cluster
plot_dot	Create dot plot for annotation results
process_results	Title Annotate cell types for single cell RNA data
summarycelltype	Print test results
test_fisher	Fisher exact test used in function 'easyct'