BioCor-package | BioCor: A package to calculate functional similarities |
addSimilarities | Additive integration of similarities |
AintoB | Insert a matrix into another |
BioCor | BioCor: A package to calculate functional similarities |
clusterGeneSim | Similarity score between clusters of genes based on genes similarity |
clusterGeneSim-method | Similarity score between clusters of genes based on genes similarity |
clusterSim | Similarity score between clusters of genes based on pathways similarity |
clusterSim-method | Similarity score between clusters of genes based on pathways similarity |
combinadic | i-th combination of n elements taken from r |
combineScores | Combining values |
combineScoresPar | Combining values |
combineSources | Combine different sources of pathways |
conversions | Convert the similarities formats |
D2J | Convert the similarities formats |
diceSim | Compare pathways |
duplicateIndices | Finds the indices of the duplicated events of a vector |
geneSim | Similarity score genes based on pathways similarity |
geneSim-method | Similarity score genes based on pathways similarity |
inverseList | Invert a list |
J2D | Convert the similarities formats |
mclusterGeneSim | Similarity score between clusters of genes based on genes similarity |
mclusterGeneSim-method | Similarity score between clusters of genes based on genes similarity |
mclusterSim | Similarity score between clusters of genes based on pathways similarity |
mclusterSim-method | Similarity score between clusters of genes based on pathways similarity |
mgeneSim | Similarity score genes based on pathways similarity |
mgeneSim-method | Similarity score genes based on pathways similarity |
mpathSim | Calculates the Dice similarity between pathways |
mpathSim-method | Calculates the Dice similarity between pathways |
pathSim | Calculates the Dice similarity between pathways |
pathSim-method | Calculates the Dice similarity between pathways |
removeDup | Remove duplicated rows and columns |
seq2mat | Transforms a vector to a symmetric matrix |
similarities | Apply a function to a list of similarities |
weighted | Weighted operations |
weighted.prod | Weighted operations |
weighted.sum | Weighted operations |