Functional similarities

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Documentation for package ‘BioCor’ version 1.24.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BioCor-package	BioCor: A package to calculate functional similarities
addSimilarities	Additive integration of similarities
AintoB	Insert a matrix into another
BioCor	BioCor: A package to calculate functional similarities
clusterGeneSim	Similarity score between clusters of genes based on genes similarity
clusterGeneSim-method	Similarity score between clusters of genes based on genes similarity
clusterSim	Similarity score between clusters of genes based on pathways similarity
clusterSim-method	Similarity score between clusters of genes based on pathways similarity
combinadic	i-th combination of n elements taken from r
combineScores	Combining values
combineScoresPar	Combining values
combineSources	Combine different sources of pathways
conversions	Convert the similarities formats
D2J	Convert the similarities formats
diceSim	Compare pathways
duplicateIndices	Finds the indices of the duplicated events of a vector
geneSim	Similarity score genes based on pathways similarity
geneSim-method	Similarity score genes based on pathways similarity
inverseList	Invert a list
J2D	Convert the similarities formats
mclusterGeneSim	Similarity score between clusters of genes based on genes similarity
mclusterGeneSim-method	Similarity score between clusters of genes based on genes similarity
mclusterSim	Similarity score between clusters of genes based on pathways similarity
mclusterSim-method	Similarity score between clusters of genes based on pathways similarity
mgeneSim	Similarity score genes based on pathways similarity
mgeneSim-method	Similarity score genes based on pathways similarity
mpathSim	Calculates the Dice similarity between pathways
mpathSim-method	Calculates the Dice similarity between pathways
pathSim	Calculates the Dice similarity between pathways
pathSim-method	Calculates the Dice similarity between pathways
removeDup	Remove duplicated rows and columns
seq2mat	Transforms a vector to a symmetric matrix
similarities	Apply a function to a list of similarities
weighted	Weighted operations
weighted.prod	Weighted operations
weighted.sum	Weighted operations