Functional similarities


[Up] [Top]

Documentation for package ‘BioCor’ version 1.24.0

Help Pages

BioCor-package BioCor: A package to calculate functional similarities
addSimilarities Additive integration of similarities
AintoB Insert a matrix into another
BioCor BioCor: A package to calculate functional similarities
clusterGeneSim Similarity score between clusters of genes based on genes similarity
clusterGeneSim-method Similarity score between clusters of genes based on genes similarity
clusterSim Similarity score between clusters of genes based on pathways similarity
clusterSim-method Similarity score between clusters of genes based on pathways similarity
combinadic i-th combination of n elements taken from r
combineScores Combining values
combineScoresPar Combining values
combineSources Combine different sources of pathways
conversions Convert the similarities formats
D2J Convert the similarities formats
diceSim Compare pathways
duplicateIndices Finds the indices of the duplicated events of a vector
geneSim Similarity score genes based on pathways similarity
geneSim-method Similarity score genes based on pathways similarity
inverseList Invert a list
J2D Convert the similarities formats
mclusterGeneSim Similarity score between clusters of genes based on genes similarity
mclusterGeneSim-method Similarity score between clusters of genes based on genes similarity
mclusterSim Similarity score between clusters of genes based on pathways similarity
mclusterSim-method Similarity score between clusters of genes based on pathways similarity
mgeneSim Similarity score genes based on pathways similarity
mgeneSim-method Similarity score genes based on pathways similarity
mpathSim Calculates the Dice similarity between pathways
mpathSim-method Calculates the Dice similarity between pathways
pathSim Calculates the Dice similarity between pathways
pathSim-method Calculates the Dice similarity between pathways
removeDup Remove duplicated rows and columns
seq2mat Transforms a vector to a symmetric matrix
similarities Apply a function to a list of similarities
weighted Weighted operations
weighted.prod Weighted operations
weighted.sum Weighted operations