scpdata

DOI: 10.18129/B9.bioc.scpdata  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see scpdata.

Single-Cell Proteomics Data Package

Bioconductor version: 3.16

The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and formatted using the `scp` data structure. The data sets contain quantitative information at spectrum, peptide and/or protein level for single cells or minute sample amounts.

Author: Christophe Vanderaa [aut, cre] , Laurent Gatto [aut]

Maintainer: Christophe Vanderaa <christophe.vanderaa at uclouvain.be>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scpdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scpdata")

 

HTML	R Script	Data Package for Single Cell Proteomics
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, MassSpectrometryData, PackageTypeData, Proteome, ReproducibleResearch, SingleCellData
Version	1.6.0
License	GPL-2
Depends	R (>= 4.2.0), QFeatures, ExperimentHub
Imports	utils, AnnotationHub, SingleCellExperiment, S4Vectors
LinkingTo
Suggests	scp, magrittr, dplyr, knitr, BiocStyle, BiocCheck, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scpdata_1.6.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/scpdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scpdata
Package Short Url	https://bioconductor.org/packages/scpdata/
Package Downloads Report	Download Stats