octad.db

DOI: 10.18129/B9.bioc.octad.db  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see octad.db.

Open Cancer TherApeutic Discovery (OCTAD) database

Bioconductor version: 3.16

Open Cancer TherApeutic Discovery (OCTAD) package implies sRGES approach for the drug discovery. The essential idea is to identify drugs that reverse the gene expression signature of a disease by tamping down over-expressed genes and stimulating weakly expressed ones. The following package contains all required precomputed data for whole OCTAD pipeline computation.

Author: E. Chekalin [aut, cre], S. Paithankar [aut], B. Zeng [aut], B. Glicksberg [ctb], P. Newbury [ctb], J. Xing [ctb], K. Liu [ctb], A. Wen [ctb], D. Joseph [ctb], B. Chen [aut]

Maintainer: E. Chekalin <eygen.chekalin at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("octad.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("octad.db")

 

HTML	R Script	octad.db
PDF		Reference Manual
Text		NEWS

Details

biocViews	CancerData, ExperimentData, ExperimentHub, ExpressionData, SequencingData
Version	1.0.0
License	Artistic-2.0
Depends	R (>= 4.2.0), ExperimentHub
Imports
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me	octad
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	octad.db_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/octad.db
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/octad.db
Package Short Url	https://bioconductor.org/packages/octad.db/
Package Downloads Report	Download Stats