BSgenome.Mmusculus.UCSC.mm10

DOI: 10.18129/B9.bioc.BSgenome.Mmusculus.UCSC.mm10  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Mmusculus.UCSC.mm10.

Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)

Bioconductor version: 3.16

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, based on GRCm38.p6) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Mmusculus.UCSC.mm10")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, BSgenome, Genetics, Mus_musculus
Version	1.4.3
License	Artistic-2.0
Depends	R (>= 3.5.0), BSgenome(>= 1.60.0)
Imports	BSgenome
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	BSgenome.Mmusculus.UCSC.mm10.masked
Imports Me	ATACCoGAPS, BSgenome.Mmusculus.UCSC.mm10.masked, GeneStructureTools, musicatk, trena
Suggests Me	AneuFinder, BSgenome, circRNAprofiler, crisprDesign, CRISPRseek, enhancerHomologSearch, EpiCompare, factR, gcapc, GenomicRanges, GRaNIE, HiCDCPlus, InPAS, m6Aboost, MiRaGE, monaLisa, Motif2Site, multicrispr, NADfinder, periodicDNA, scanMiRApp, scmeth, SCOPE, SingleMoleculeFootprinting
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Mmusculus.UCSC.mm10_1.4.3.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/
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