BSgenome.Hsapiens.UCSC.hg38

DOI: 10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg38  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Hsapiens.UCSC.hg38.

Full genomic sequences for Homo sapiens (UCSC genome hg38)

Bioconductor version: 3.16

Full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31). The sequences are stored in DNAString objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Version	1.4.5
License	Artistic-2.0
Depends	R (>= 4.2.0), GenomeInfoDb(>= 1.34.9), BSgenome(>= 1.66.2)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	BSgenome.Hsapiens.UCSC.hg38.masked
Imports Me	branchpointer, katdetectr, musicatk, ORFhunteR, primirTSS, trena
Suggests Me	BSgenome, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor, bsseq, BUSpaRse, cfDNAPro, ChIPpeakAnno, circRNAprofiler, CNEr, crisprBowtie, crisprBwa, crisprDesign, crisprViz, eisaR, enhancerHomologSearch, EpiCompare, EpiTxDb, GenVisR, GRaNIE, GUIDEseq, HiCDCPlus, MethReg, Motif2Site, multicrispr, periodicDNA, pqsfinder, REMP, scanMiRApp, SCOPE, signeR, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh38, supersigs, TAPseq, Ularcirc, XNAString, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz
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macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38/
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