qPLEXanalyzer

DOI: 10.18129/B9.bioc.qPLEXanalyzer  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see qPLEXanalyzer.

Tools for quantitative proteomics data analysis

Bioconductor version: 3.16

Tools for TMT based quantitative proteomics data analysis.

Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]

Maintainer: Ashley Sawle <ads2202cu at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qPLEXanalyzer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qPLEXanalyzer")

 

HTML	R Script	qPLEXanalyzer
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version	1.16.1
In Bioconductor since	BioC 3.8 (R-3.5) (4.5 years)
License	GPL-2
Depends	R (>= 4.0), Biobase, MSnbase
Imports	assertthat, BiocGenerics, Biostrings, dplyr (>= 1.0.0), ggdendro, ggplot2, graphics, grDevices, IRanges, limma, magrittr, preprocessCore, purrr, RColorBrewer, readr, rlang, scales, stats, stringr, tibble, tidyr, tidyselect, utils
LinkingTo
Suggests	gridExtra, knitr, qPLEXdata, rmarkdown, testthat, UniProt.ws, vdiffr
SystemRequirements
Enhances
URL
BugReports	https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues
Depends On Me	qPLEXdata
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	qPLEXanalyzer_1.16.1.tar.gz
Windows Binary	qPLEXanalyzer_1.16.1.zip (64-bit only)
macOS Binary (x86_64)	qPLEXanalyzer_1.16.1.tgz
macOS Binary (arm64)	qPLEXanalyzer_1.16.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/qPLEXanalyzer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/qPLEXanalyzer
Bioc Package Browser	https://code.bioconductor.org/browse/qPLEXanalyzer/
Package Short Url	https://bioconductor.org/packages/qPLEXanalyzer/
Package Downloads Report	Download Stats