iSEEhub

DOI: 10.18129/B9.bioc.iSEEhub  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see iSEEhub.

iSEE for the Bioconductor ExperimentHub

Bioconductor version: 3.16

This package defines a custom landing page for an iSEE app interfacing with the Bioconductor ExperimentHub. The landing page allows users to browse the ExperimentHub, select a data set, download and cache it, and import it directly into a Bioconductor iSEE app.

Author: Kevin Rue-Albrecht [aut, cre]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSEEhub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEhub")

 

HTML	R Script	Contributing to iSEEhub
HTML	R Script	Introduction to iSEEhub
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, ImmunoOncology, Infrastructure, SingleCell, Software
Version	1.0.0
In Bioconductor since	BioC 3.16 (R-4.2) (< 6 months)
License	Artistic-2.0
Depends	SummarizedExperiment, SingleCellExperiment, ExperimentHub
Imports	AnnotationHub, BiocManager, DT, iSEE, methods, rintrojs, S4Vectors, shiny, shinydashboard, shinyjs, utils
LinkingTo
Suggests	BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), nullrangesData
SystemRequirements
Enhances	BioPlex, biscuiteerData, bodymapRat, CLLmethylation, CopyNeutralIMA, curatedAdipoArray, curatedAdipoChIP, curatedMetagenomicData, curatedTCGAData, DMRcatedata, DuoClustering2018, easierData, emtdata, epimutacionsData, FieldEffectCrc, GenomicDistributionsData, GSE103322, GSE13015, GSE62944, HDCytoData, HMP16SData, HumanAffyData, imcdatasets, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, MethylSeqData, muscData, NxtIRFdata, ObMiTi, quantiseqr, restfulSEData, RLHub, sesameData, SimBenchData, SingleCellMultiModal, SingleMoleculeFootprintingData, spatialDmelxsim, STexampleData, TabulaMurisData, TabulaMurisSenisData, TENxVisiumData, tissueTreg, VectraPolarisData, xcoredata
URL	https://github.com/iSEE/iSEEhub
BugReports	https://support.bioconductor.org/t/iSEEhub
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iSEEhub_1.0.0.tar.gz
Windows Binary	iSEEhub_1.0.0.zip
macOS Binary (x86_64)	iSEEhub_1.0.0.tgz
macOS Binary (arm64)	iSEEhub_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iSEEhub
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iSEEhub
Bioc Package Browser	https://code.bioconductor.org/browse/iSEEhub/
Package Short Url	https://bioconductor.org/packages/iSEEhub/
Package Downloads Report	Download Stats