Cormotif

DOI: 10.18129/B9.bioc.Cormotif  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see Cormotif.

Correlation Motif Fit

Bioconductor version: 3.16

It fits correlation motif model to multiple studies to detect study specific differential expression patterns.

Author: Hongkai Ji, Yingying Wei

Maintainer: Yingying Wei <ywei at jhsph.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Cormotif")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Cormotif")

 

PDF	R Script	Cormotif Vignette
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, Software
Version	1.44.0
In Bioconductor since	BioC 2.9 (R-2.14) (11.5 years)
License	GPL-2
Depends	R (>= 2.12.0), affy, limma
Imports	affy, graphics, grDevices
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Cormotif_1.44.0.tar.gz
Windows Binary	Cormotif_1.44.0.zip
macOS Binary (x86_64)	Cormotif_1.44.0.tgz
macOS Binary (arm64)	Cormotif_1.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Cormotif
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Cormotif
Bioc Package Browser	https://code.bioconductor.org/browse/Cormotif/
Package Short Url	https://bioconductor.org/packages/Cormotif/
Package Downloads Report	Download Stats