BridgeDbR

DOI: 10.18129/B9.bioc.BridgeDbR  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see BridgeDbR.

Code for using BridgeDb identifier mapping framework from within R

Bioconductor version: 3.16

Use BridgeDb functions and load identifier mapping databases in R. It uses GitHub, Zenodo, and Figshare if you use this package to download identifier mappings files.

Author: Christ Leemans <christleemans at gmail.com>, Egon Willighagen <egon.willighagen at gmail.com>, Denise Slenter, Anwesha Bohler <anweshabohler at gmail.com>, Lars Eijssen <l.eijssen at maastrichtuniversity.nl>, Tooba Abbassi-Daloii

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BridgeDbR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BridgeDbR")

 

HTML	R Script	Tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Cheminformatics, Metabolomics, Software
Version	2.8.0
In Bioconductor since	BioC 3.0 (R-3.1) (8.5 years)
License	AGPL-3
Depends	R (>= 3.3.0), rJava
Imports	curl
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/bridgedb/BridgeDbR
BugReports	https://github.com/bridgedb/BridgeDbR/issues
Depends On Me
Imports Me
Suggests Me	rWikiPathways
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BridgeDbR_2.8.0.tar.gz
Windows Binary	BridgeDbR_2.8.0.zip
macOS Binary (x86_64)	BridgeDbR_2.8.0.tgz
macOS Binary (arm64)	BridgeDbR_2.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BridgeDbR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BridgeDbR
Bioc Package Browser	https://code.bioconductor.org/browse/BridgeDbR/
Package Short Url	https://bioconductor.org/packages/BridgeDbR/
Package Downloads Report	Download Stats