VirtUaL ChIP-Seq data Analysis using Networks

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Documentation for package ‘vulcan’ version 1.20.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

average_fragment_length	Define the average fragment length
corr2p	Convert correlation coefficient to p-value
densityauc	densityauc - Calculate the AUC of a density object
dpareto	Probability density of Pareto distributions
fisherp	Fisher integration of p-values
gsea	GSEA
kmgformat	kmgformat - Nice Formatting of Numbers
null_gsea	Calculate Null Distribution for GSEA
p2corr	Convert p-value to correlation coefficient
p2z	p2z
pareto.fit	Estimate parameters of Pareto distribution
plot_gsea	Plot GSEA results
ppareto	Cumulative distribution function of the Pareto distributions ' Gives NA on values < threshold
rea	REA: Rank EnrichmeNt Analysis
slice	Slice
stouffer	Stouffer integration of Z scores
textplot2	textplot2 - An x y plot of non-overlapping text
val2col	Convert a numeric vector into colors
vulcan	VULCAN - VirtUaL Chipseq data Analysis using Networks
vulcan.annotate	Function to annotate peaks for VULCAN analysis
vulcan.import	Function to import BAM files
vulcan.normalize	Function to normalize promoter peak data
vulcan.pathways	Function to calculate pathway enrichment over a ChIP-Seq profile
wstouffer	Weighted Stouffer integration of Z scores
z2p	z2p