average_fragment_length |
Define the average fragment length |
corr2p |
Convert correlation coefficient to p-value |
densityauc |
densityauc - Calculate the AUC of a density object |
dpareto |
Probability density of Pareto distributions |
fisherp |
Fisher integration of p-values |
gsea |
GSEA |
kmgformat |
kmgformat - Nice Formatting of Numbers |
null_gsea |
Calculate Null Distribution for GSEA |
p2corr |
Convert p-value to correlation coefficient |
p2z |
p2z |
pareto.fit |
Estimate parameters of Pareto distribution |
plot_gsea |
Plot GSEA results |
ppareto |
Cumulative distribution function of the Pareto distributions ' Gives NA on values < threshold |
rea |
REA: Rank EnrichmeNt Analysis |
slice |
Slice |
stouffer |
Stouffer integration of Z scores |
textplot2 |
textplot2 - An x y plot of non-overlapping text |
val2col |
Convert a numeric vector into colors |
vulcan |
VULCAN - VirtUaL Chipseq data Analysis using Networks |
vulcan.annotate |
Function to annotate peaks for VULCAN analysis |
vulcan.import |
Function to import BAM files |
vulcan.normalize |
Function to normalize promoter peak data |
vulcan.pathways |
Function to calculate pathway enrichment over a ChIP-Seq profile |
wstouffer |
Weighted Stouffer integration of Z scores |
z2p |
z2p |