scanMiR
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Documentation for package ‘scanMiR’ version 1.4.0
Help Pages
| aggregateMatches | aggregateMatches |
| assignKdType | assignKdType |
| c-method | miRNA affinity models |
| conservation | conservation |
| dummyKdData | Create dummy log_kd per 12-mer data |
| findSeedMatches | Predicting and characterizing miRNA binding sites |
| get3pAlignment | Finds 3' complementary binding of a miRNA |
| get8merRange | get8merRange |
| getKdModel | getKdModel |
| getKmers | getKmers |
| getMatchTypes | getMatchTypes |
| getRandomSeq | getRandomSeq |
| getSeed8mers | getSeed8mers |
| KdModel | miRNA affinity models |
| KdModel-class | miRNA affinity models |
| KdModel-methods | miRNA affinity models |
| KdModelList | KdModelList |
| KdModelList-class | KdModelList |
| KdModelList-methods | Methods for the 'KdModelList' classes |
| KdModelList-methods-method | Methods for the 'KdModelList' classes |
| plotKdModel | plotKdModel |
| removeOverlappingRanges | removeOverlappingRanges |
| SampleKdModel | Example KdModel (hsa-miR-155-5p) |
| SampleTranscript | Example transcript sequence |
| show-method | miRNA affinity models |
| summary-method | miRNA affinity models |
| summary-method | Methods for the 'KdModelList' classes |
| viewTargetAlignment | viewTargetAlignment |
| [-method | Methods for the 'KdModelList' classes |