ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

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Documentation for package ‘ASpediaFI’ version 1.11.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

analyzeFI	Functional interaction analysis of AS events
annotateASevents	AS event annotation
as.table	ASpediaFI accessors
as.table-method	ASpediaFI accessors
as.table<-	ASpediaFI accessors
as.table<--method	ASpediaFI accessors
ASpediaFI	ASpediaFI class
ASpediaFI-accessor	ASpediaFI accessors
ASpediaFI-class	ASpediaFI class
events	ASpediaFI accessors
events-method	ASpediaFI accessors
events<-	ASpediaFI accessors
events<--method	ASpediaFI accessors
exportNetwork	Export network to GML format
gene.table	ASpediaFI accessors
gene.table-method	ASpediaFI accessors
gene.table<-	ASpediaFI accessors
gene.table<--method	ASpediaFI accessors
GSE114922.fpkm	Example gene expression dataset
GSE114922.psi	Example dataset containing PSI values
gtf	ASpediaFI accessors
gtf-method	ASpediaFI accessors
gtf<-	ASpediaFI accessors
gtf<--method	ASpediaFI accessors
network	ASpediaFI accessors
network-method	ASpediaFI accessors
network<-	ASpediaFI accessors
network<--method	ASpediaFI accessors
pathway.table	ASpediaFI accessors
pathway.table-method	ASpediaFI accessors
pathway.table<-	ASpediaFI accessors
pathway.table<--method	ASpediaFI accessors
psi	ASpediaFI accessors
psi-method	ASpediaFI accessors
psi<-	ASpediaFI accessors
psi<--method	ASpediaFI accessors
quantifyPSI	AS event quantification
samples	ASpediaFI accessors
samples-method	ASpediaFI accessors
samples<-	ASpediaFI accessors
samples<--method	ASpediaFI accessors
visualize	AS event and pathway visualization