Visualize Intensities Produced by Illumina's Human Methylation 450k BeadChip


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Documentation for package ‘skewr’ version 1.30.0

Help Pages

getBarcodes Get barcodes from idat file names
getMethyLumiSet Read idat files and create a 'MethyLumiSet' object
getSNparams Estimate parameters for finite mixture of Skew-Normal distributions
panelPlots Plot the distributions of the probe intensities and the components of the skew-normal mixture model
preprocess Normalize a MethyLumiSet object using some popular choices
subsetProbes Conveniently subset probes by type and retrieve the methylated or unmethylated intensities