Accurate consensus sequence from nanopore reads of a gene library


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Documentation for package ‘single’ version 1.2.0

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bases Bases
evaluate_fits Evaluate SINGLE fits
fit_logregr Fit SINGLE's logistic regression
glm.predict. Computes prior probability of mutations
list_mismatches Lists mismatches between two DNAstrings
mutation_rate mutation_rate
pileup_by_QUAL Pileup by QUAL
p_prior_errors Computes prior probability of errors
p_prior_mutations Computes prior probability of mutations
single_consensus_byBarcode Compute SINGLE consensus
single_evaluate Evaluate SINGLE model
single_train Train SINGLE model
weighted_consensus Compute consensus sequence