signeR-package | Empirical Bayesian approach to mutational signature discovery |
Average_exp | SignExp class methods |
Average_exp-method | SignExp class methods |
Average_sign | SignExp class methods |
Average_sign-method | SignExp class methods |
BICboxplot | signeR plot functions |
cosmic_data | COSMIC Mutational Signatures |
DiffExp | Differential Exposure Analysis |
DiffExp-method | Differential Exposure Analysis |
ExposureBarplot | signeR plot functions |
ExposureBarplot-method | signeR plot functions |
ExposureBoxplot | signeR plot functions |
ExposureBoxplot-method | signeR plot functions |
ExposureClassify | Classify samples by exposure levels |
ExposureClassify-method | Classify samples by exposure levels |
ExposureClassifyCV | k-fold cross-validation of sample classifcation by exposure levels |
ExposureClassifyCV-method | k-fold cross-validation of sample classifcation by exposure levels |
ExposureCorrelation | Exposure correlation analysis (given a known sample feature) |
ExposureCorrelation-method | Exposure correlation analysis (given a known sample feature) |
ExposureGLM | Exposure Generalized Linear Model |
ExposureGLM-method | Exposure Generalized Linear Model |
ExposureHeat | signeR plot functions |
ExposureHeat-method | signeR plot functions |
ExposureSurvival | Exposure survival analysis |
ExposureSurvival-method | Exposure survival analysis |
ExposureSurvModel | Exposure Cox model |
ExposureSurvModel-method | Exposure Cox model |
FuzzyClustExp | Fuzzy Clustering of exposure data |
FuzzyClustExp-method | Fuzzy Clustering of exposure data |
genCountMatrixFromVcf | count matrix and opportinity matrix generators |
genOpportunityFromGenome | count matrix and opportinity matrix generators |
HClustExp | Hierarchical Clustering of exposure data |
HClustExp-method | Hierarchical Clustering of exposure data |
Median_exp | SignExp class methods |
Median_exp-method | SignExp class methods |
Median_sign | SignExp class methods |
Median_sign-method | SignExp class methods |
Normalize | SignExp class methods |
Normalize-method | SignExp class methods |
Paths | signeR plot functions |
Paths-method | signeR plot functions |
Reorder_mutations | SignExp class methods |
Reorder_mutations-method | SignExp class methods |
Reorder_samples | SignExp class methods |
Reorder_samples-method | SignExp class methods |
Reorder_signatures | SignExp class methods |
Reorder_signatures-method | SignExp class methods |
setMutations | SignExp class methods |
setMutations-method | SignExp class methods |
setSamples | SignExp class methods |
setSamples-method | SignExp class methods |
signeR | signeR |
signeRFlow | Launch signeRFlow R Shiny web app |
SignExp | SignExp class |
SignExp-class | SignExp class |
SignHeat | signeR plot functions |
SignHeat-method | signeR plot functions |
SignPlot | signeR plot functions |
SignPlot-method | signeR plot functions |
tcga_similarities | TCGA Cosmic similarities |
tcga_tumors | TCGA tumors used on TCGA Explorer |