Tools for conducting enrichment analysis of MeSH


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Documentation for package ‘meshr’ version 2.4.0

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meshr-package Enrichment analysis for MeSH terms.
annotation-method Class "MeSHHyperGParams"
annotation<--method Class "MeSHHyperGParams"
category A function to return the name of MeSH category
category-method A function to return the name of MeSH category
category<- A function to return the name of MeSH category
category<--method A function to return the name of MeSH category
database A function to return the name of MeSH database
database-method A function to return the name of MeSH database
database<- A function to return the name of MeSH database
database<--method A function to return the name of MeSH database
geneIds-method Class "MeSHHyperGParams"
geneIds<--method Class "MeSHHyperGParams"
generic,category A function to return the name of MeSH category
generic,database A function to return the name of MeSH database
initialize-method Class "MeSHHyperGParams"
makeValidParams-method Class "MeSHHyperGParams"
meshAnnotation Class "MeSHHyperGResult"
meshAnnotation-method Class "MeSHHyperGResult"
meshCategory Class "MeSHHyperGResult"
meshCategory-method Class "MeSHHyperGResult"
meshDatabase Class "MeSHHyperGResult"
meshDatabase-method Class "MeSHHyperGResult"
MeSHHyperGParams-class Class "MeSHHyperGParams"
MeSHHyperGResult-class Class "MeSHHyperGResult"
meshHyperGTest Hypergeometric Tests for MeSH term association
meshHyperGTest-method Hypergeometric Tests for MeSH term association
meshIds Class "MeSHHyperGResult"
meshIds-method Class "MeSHHyperGResult"
meshr Enrichment analysis for MeSH terms.
meshTerms Class "MeSHHyperGResult"
meshTerms-method Class "MeSHHyperGResult"
pAdjust Class "MeSHHyperGParams"
pAdjust-method Class "MeSHHyperGParams"
pAdjust<- Class "MeSHHyperGParams"
pAdjust<--method Class "MeSHHyperGParams"
pvalueCutoff-method Class "MeSHHyperGParams"
pvalueCutoff<--method Class "MeSHHyperGParams"
pvalues Class "MeSHHyperGResult"
pvalues-method Class "MeSHHyperGResult"
show Class "MeSHHyperGResult"
show-method Class "MeSHHyperGResult"
summary Class "MeSHHyperGResult"
summary-method Class "MeSHHyperGResult"
universeGeneIds Class "MeSHHyperGParams"
universeGeneIds-method Class "MeSHHyperGParams"
universeGeneIds<- Class "MeSHHyperGParams"
universeGeneIds<--method Class "MeSHHyperGParams"