R Wrapper for HISAT2 Aligner


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Documentation for package ‘Rhisat2’ version 1.14.0

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Rhisat2-package R hisat2 wrapper
extract_splice_sites Extract splice sites from annotation
hisat2 Align reads with HISAT2
hisat2_build Generate HISAT2 index
hisat2_build_usage Print usage of hisat2-build
hisat2_usage Print usage of hisat2
hisat2_version Print HISAT2 version