Random walk with restart on multiplex and heterogeneous Networks


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Documentation for package ‘RandomWalkRestartMH’ version 1.18.0

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compute.adjacency.matrix Computes the adjacency matrix of a multiplex network
compute.transition.matrix Computes the transition matrix of a multiplex and heterogeneous network
create.multiplex Create multiplex graphs from individual networks
create.multiplex.default Create multiplex graphs from individual networks
create.multiplexHet Create multiplex heterogeneous graphs from individual networks
create.multiplexHet.default Create multiplex heterogeneous graphs from individual networks
create.multiplexHetNetwork.topResults Creates a Network with the top results of the Random Walk with restart on a Multiplex and Heterogeneous Network
create.multiplexNetwork.topResults Creates a Network with the top results of the Random Walk with restart on a Multiplex Network
Disease_Network A disease-disease similarity network.
GeneDiseaseRelations Diseases and their causative genes
isMultiplex Is this R object a Multiplex object?
isMultiplexHet Is this R object a Multiplex Heterogeneous object?
isRWRMH_Results Is this R object a RWR on Multiplex-Heterogeneous object (Results of the RWR-MH)?
isRWRM_Results Is this R object a RWR on Multiplex object (Results of the RWR-M)?
normalize.multiplex.adjacency Computes column normalization of an adjacency matrix
Pathway_Network A pathway network (Pathway network)
PPI_Network A protein-protein physical interaction network (PPI network)
Random.Walk.Restart.Multiplex Performs Random Walk with Restart on a Multiplex Network
Random.Walk.Restart.Multiplex.default Performs Random Walk with Restart on a Multiplex Network
Random.Walk.Restart.MultiplexHet Performs Random Walk with Restart on a Multiplex and Heterogeneous Network
Random.Walk.Restart.MultiplexHet.default Performs Random Walk with Restart on a Multiplex and Heterogeneous Network