This package is designed to perform Gene Set Analysis across multiple genomic platforms


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Documentation for package ‘RTopper’ version 1.44.1

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RTopper-package A package to perform run Gene Set Enrichment across genomic platforms
adjustPvalGSE Multiple testing correction
combineGSE Combines GSE results
computeDrStat Computes gene-to-phenotype associations scores
convertToDr Converts genomic data to a list suitable for computing gene-to-phenotype scores
dat A test dataset for the RTopper package
fgsList A list of Functional Gene Set (FGS) to be used to run the examples in the RTopper package
gseResultsSep A list of separated gene set enrichment p-values to be used to run the examples in the RTopper package
intScores A list of genomic scores integrated across distinct data sets to be used to run the examples in the RTopper package
pheno A test dataset for the RTopper package
RTopper A package to perform run Gene Set Enrichment across genomic platforms
runBatchGSE To perform GSE analysis over multipple experiments and functional themes
sepScores A list of separate gene-to-phenotype association scores, obtained indipendently for each distinct data set to be used to run the examples in the RTopper package