RESOLVE: An R package for the efficient analysis of mutational signatures from cancer genomes


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Documentation for package ‘RESOLVE’ version 1.0.0

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RESOLVE-package An R package for the efficient analysis of mutational signatures from cancer genomes.
background germline replication error
background2 COSMIC replication error
getMNVCounts getMNVCounts
getSBSCounts getSBSCounts
groupsCNPlot groupsCNPlot
groupsCXPlot groupsCXPlot
groupsMNVPlot groupsMNVPlot
groupsSBSPlot groupsSBSPlot
patients point mutations for 560 breast tumors
patientsCNPlot patientsCNPlot
patientsCXPlot patientsCXPlot
patientsMNVPlot patientsMNVPlot
patientsSBSPlot patientsSBSPlot
plot_data_examples list data structure to run examples
RESOLVE An R package for the efficient analysis of mutational signatures from cancer genomes.
signaturesAssignment signaturesAssignment
signaturesCNPlot signaturesCNPlot
signaturesCV signaturesCV
signaturesCXPlot signaturesCXPlot
signaturesDecomposition signaturesDecomposition
signaturesMNVPlot signaturesMNVPlot
signaturesSBSPlot signaturesSBSPlot
signaturesSignificance signaturesSignificance
ssm560_reduced a reduced version of the point mutations for 560 breast tumors in the format compatible with the import function