abundancePlot |
Function to summarize and plot abundance information from an annotations results list |
annotationPlot |
Function to summarize and plot extracted GO or pathway annotation |
compareAnnot |
Function to compare annotation percentages |
ExcelToPloGO |
Function to add GO annotation to an Excel spread sheet |
ExcelToPloPathway |
Function to add KEGG pathway annotation to an Excel spread sheet |
genAnnotationFiles |
Function to generate a format in Wego native style from a list of Uniprot identifiers |
genWegoFile |
Function to generate a format in Wego native style from a list of Uniprot identifiers |
getGoID |
Function to map a vector of GO terms to the corresponding GO ID's |
GOTermList |
Function to extract a list of GO terms at level 2,3 or 4 of the GO hierarchy |
PloGO |
Function to do steps of GO annotation and annotation/abundance plots |
PloPathway |
Function to do steps of pathway annotation and annotation/abundance plots |
plotAbundanceBar |
Function to plot abundance barplot |
printSummary |
Function to print the summary file of PloGO2 results. |
processAnnotation |
Function to process a set of annotation files given a list of GO/pathway identifiers of interest |
processGoFile |
Function to process a single file in wego-like native format |
processPathFile |
Function to process a single pathway file in wego-like native format |
read.annot.file |
Function to read an annotation file. |
writeAnnotation |
Function to print GO/pathway annotation to files |