An R/shiny package for microbiome functional enrichment analysis


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Documentation for package ‘MicrobiomeProfiler’ version 1.4.0

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MicrobiomeProfiler-package Functional enrichment analysis for microbiome data
bitr_smpdb convert metabolite IDs
enrichCOG COG enrichment analysis for microbiome data
enrichHMDB Metabolism enrichment analysis for microbiome data
enrichKO KO enrichment for microbiome data
enrichMBKEGG Metabolism enrichment analysis for microbiome data
enrichMDA Microbe-Disease associations enrichment analysis
enrichSMPDB Metabolism enrichment analysis for microbiome data
MicrobiomeProfiler Functional enrichment analysis for microbiome data
microbiota_data Example data: a vector of 54 bacterial genera tested for significantly between T2D metformin samples
microbiota_taxlist Example data: a vector of 54 bacterial genera tested for significantly between T2D metformin samples
Psoriasis_data Example data: a vector of 134 significantly different functional COGs between Psoriasis patients and controls
Rat_data Example data: a vector of 91 KEGG Orthologies (KOs) showing significant associations with weaning weight
run_MicrobiomeProfiler Run the Shiny Application