CoverageView-package | Coverage visualization package for R |
cov.interval | arithmetic operation on an interval |
cov.interval-method | arithmetic operation on an interval |
cov.matrix | Compute a coverage matrix |
cov.matrix-method | Compute a coverage matrix |
CoverageBamFile | Class '"CoverageBamFile"' |
CoverageBamFile-class | Class '"CoverageBamFile"' |
CoverageBigWigFile | Class '"CoverageBigWigFile"' |
CoverageBigWigFile-class | Class '"CoverageBigWigFile"' |
CoverageView | Coverage visualization package for R |
DF_H3K36me3 | Example of a coverage matrix using the ChIP-seq data for the H3K36me3 histone modification experiment |
DF_H3K36me3_control | Example of a coverage matrix using the control replicate for the ChIP-seq data for the H3K36me3 histone modification experiment |
DF_H3K4me3 | Example of a coverage matrix using the ChIP-seq data for the H3K4me3 histone modification experiment |
DF_H3K4me3_ctl | Example of a coverage matrix using the control replicate for the ChIP-seq data for the H3K4me3 histone modification experiment |
DF_H3K4me3_nopeaks_ratios | Example of a matrix with the ratio of the coverages using the ChIP-seq data for the H3K4me3 histone modification experiment |
draw.heatmap | Draw a coverage heatmap |
draw.heatmap-method | Draw a coverage heatmap |
draw.profile | Draw a coverage profile |
draw.profile-method | Draw a coverage profile |
export.wig | Generates a WIG file containing the coverage values for a certain genomic interval |
export.wig-method | Generates a WIG file containing the coverage values for a certain genomic interval |
FoxA1_chr19 | Example of a coverage matrix using the ChIP-seq data for the FoxA1 transcription factor experiment |
genome.covplot.cumdepth | Generates a cumulative genome coverage plot |
genome.covplot.cumdepth-method | Generates a cumulative genome coverage plot |
genome.covplot.depth | Generates a genome coverage plot |
genome.covplot.depth-method | Generates a genome coverage plot |
path-method | Class '"CoverageBamFile"' |
reads_mapped-method | Class '"CoverageBamFile"' |
run_type-method | Class '"CoverageBamFile"' |
show-method | Class '"CoverageBamFile"' |
show-method | Class '"CoverageBigWigFile"' |
write.profile | Write coverage values into a file |
write.profile-method | Write coverage values into a file |