epimutacionsData

DOI: 10.18129/B9.bioc.epimutacionsData    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see epimutacionsData.

Data for epimutacions package

Bioconductor version: 3.15

This package includes the data necessary to run functions and examples in epimutacions package. Collection of DNA methylation data. The package contains 2 datasets: (1) Control ( GEO: GSE104812), (GEO: GSE97362) case samples; and (2) reference panel (GEO: GSE127824). It also contains candidate regions to be epimutations in 450k methylation arrays.

Author: Leire Abarrategui [aut, cre], Juan R. Gonzalez [aut], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut]

Maintainer: Leire Abarrategui <abarrategui.leire at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epimutacionsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epimutacionsData")

 

HTML	R Script	data repository for epimutacions package
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version	1.0.0
License	MIT + file LICENSE
Depends	R (>= 4.2.0)
Imports
LinkingTo
Suggests	rmarkdown, BiocStyle, knitr, ExperimentHub, minfi
SystemRequirements
Enhances
URL	https://github.com/LeireAbarrategui/epimutacionsData
BugReports	https://github.com/LeireAbarrategui/epimutacionsData/issues
Depends On Me	epimutacions
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	epimutacionsData_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/epimutacionsData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/epimutacionsData
Package Short Url	https://bioconductor.org/packages/epimutacionsData/
Package Downloads Report	Download Stats