TENxBrainData

DOI: 10.18129/B9.bioc.TENxBrainData    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see TENxBrainData.

Data from the 10X 1.3 Million Brain Cell Study

Bioconductor version: 3.15

Single-cell RNA-seq data for 1.3 million brain cells from E18 mice, generated by 10X Genomics.

Author: Aaron Lun [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxBrainData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBrainData")

 

HTML	R Script	Exploring the 1.3 million brain cell scRNA-seq data from 10X Genomics
PDF		Reference Manual

Details

biocViews	ExperimentData, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version	1.16.0
License	CC BY 4.0
Depends	SingleCellExperiment, HDF5Array
Imports	AnnotationHub(>= 2.9.22), ExperimentHub
LinkingTo
Suggests	knitr, BiocStyle, snow, BiocFileCache, BiocParallel, data.table, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me	OSCA.advanced
Imports Me
Suggests Me	HDF5Array
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TENxBrainData_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/TENxBrainData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TENxBrainData
Package Short Url	https://bioconductor.org/packages/TENxBrainData/
Package Downloads Report	Download Stats