HighlyReplicatedRNASeq

DOI: 10.18129/B9.bioc.HighlyReplicatedRNASeq    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see HighlyReplicatedRNASeq.

Collection of Bulk RNA-Seq Experiments With Many Replicates

Bioconductor version: 3.15

Gene-level count matrix data for bulk RNA-seq dataset with many replicates. The data are provided as easy to use SummarizedExperiment objects. The source data that is made accessible through this package comes from https://github.com/bartongroup/profDGE48.

Author: Constantin Ahlmann-Eltze [aut, cre]

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HighlyReplicatedRNASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HighlyReplicatedRNASeq")

 

HTML	R Script	Exploring the 86 bulk RNA-seq samples from the Schurch et al. (2016) study
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version	1.8.0
License	MIT + file LICENSE
Depends	SummarizedExperiment, ExperimentHub
Imports	S4Vectors
LinkingTo
Suggests	BiocStyle, BiocFileCache, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/const-ae/HighlyReplicatedRNASeq
BugReports	https://github.com/const-ae/HighlyReplicatedRNASeq/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HighlyReplicatedRNASeq_1.8.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/HighlyReplicatedRNASeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HighlyReplicatedRNASeq
Package Short Url	https://bioconductor.org/packages/HighlyReplicatedRNASeq/
Package Downloads Report	Download Stats