PubScore

DOI: 10.18129/B9.bioc.PubScore    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PubScore .

Automatic calculation of literature relevance of genes

Bioconductor version: 3.15

Calculates the importance score for a given gene. The importance score is the total counts of articles in the pubmed database that are a result for that gene AND each term of a list.

Author: Tiago Lubiana [aut, cre], Helder Nakaya [aut, ths]

Maintainer: Tiago Lubiana <tiago.lubiana.alves at usp.br>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PubScore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PubScore")

 

HTML	R Script	FCBF : Fast Correlation Based Filter for Feature Selection
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	BiomedicalInformatics, Epigenetics, GeneExpression, GeneSetEnrichment, Genetics, SingleCell, Software, SystemsBiology, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.11 (R-4.0) (2.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.0.0)
Imports	ggplot2, igraph, ggrepel, rentrez, progress, graphics, dplyr, utils, methods, intergraph, network, sna
LinkingTo
Suggests	FCBF, plotly, SummarizedExperiment, SingleCellExperiment, knitr, rmarkdown, testthat (>= 2.1.0), BiocManager, biomaRt
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PubScore_1.8.0.tar.gz
Windows Binary	PubScore_1.8.0.zip
macOS Binary (x86_64)	PubScore_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PubScore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PubScore
Package Short Url	https://bioconductor.org/packages/PubScore/
Package Downloads Report	Download Stats