Subsampling of high-throughput sequencing count data


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Documentation for package ‘subSeq’ version 1.26.0

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combineSubsamples combine multiple subsamples objects
generateSubsampledMatrix Generate the read matrix corresponding to a particular level
getSeed Extract the global random seed from a subsamples object
hammer ExpressionSet results from Hammer et al 2010
plot.subsamples plot metrics as a function of subsampled read depth
plot.summary.subsamples plot metrics as a function of subsampled read depth
ss Subsampling results using the hammer dataset
subsample Subsample reads and perform statistical testing on each sample
summary.subsamples calculate summary statistics for each subsampled depth in a subsamples object