ITALICS


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Documentation for package ‘ITALICS’ version 2.56.0

Help Pages

addInfo add info to quartet annotation
analyseCGH GLAD analysis
fromQuartetToSnp Compute the copy number of each SNP from its quartets intensities
fromSnpToQuartet Function to get from snp to quartet
getConfDat Elimination of badly predicted probes
getCorrection Correction
getEffet Effet
getModel Regression Model
getQuartet Function to retrieve the information of each quartet
getResidu Correction
getSnpInfo Function to retrieve the chromosome and the position of each SNP on a given Affymetrix SNP array
ITALICS Affymetrix SNP chip normalization
Italics Affymetrix SNP chip normalization
italics Affymetrix SNP chip normalization
readQuartetCopyNb Read PM probes of selected quartets and compute the quartet intensity
trainITALICS ITALICS training
trainItalics ITALICS training
trainitalics ITALICS training