IONiseR-package | IONiseR: A package for assessing quality of MinION data |
baseCalled | Extract baseCalled slot |
baseCalled-method | An S4 class for summarised data from a MinION sequencing run |
channelActivityPlot | Visualise a specified metric over all channels over time. |
channelHeatmap | Create layout plot of flowcell |
eventData | Extract eventData slot |
eventData-method | An S4 class for summarised data from a MinION sequencing run |
Fast5Summary-class | An S4 class for summarised data from a MinION sequencing run |
fast5toFastq | Extract FASTQ files from fast5 files |
fastq | Extract fastq slot |
fastq-method | An S4 class for summarised data from a MinION sequencing run |
fastq2D | Extract 2D reads |
fastq2D-method | An S4 class for summarised data from a MinION sequencing run |
fastqComplement | Extract complement reads |
fastqComplement-method | An S4 class for summarised data from a MinION sequencing run |
fastqTemplate | Extract template reads |
fastqTemplate-method | An S4 class for summarised data from a MinION sequencing run |
IONiseR | IONiseR: A package for assessing quality of MinION data |
layoutPlot | Create layout plot of flowcell |
length-method | An S4 class for summarised data from a MinION sequencing run |
muxHeatmap | Create layout plot of flowcell |
plotActiveChannels | Plot the number of active channels for each minute of run time |
plotBaseProductionRate | Plot the mean rate at which bases are recorded |
plotCurrentByTime | View changes in signal against run time. |
plotEventRate | Plot the mean rate at which events occur |
plotKmerFrequencyCorrelation | Display correlation between pentemer proportions in two time windows |
plotReadAccumulation | Plot the accumulation of reads over the duration of the experiment. |
plotReadCategoryCounts | Plot the proportion of template, complement and 2D reads found a dataset. |
plotReadCategoryQuals | Visualise the mean base quality of each read |
plotReadTypeProduction | View changes in signal against run time. |
readFast5Log | Read the log entry from a single fast5 file |
readFast5Summary | Read summary data from fast5 files. |
readInfo | Extract readInfo slot |
readInfo-method | An S4 class for summarised data from a MinION sequencing run |
[-method | An S4 class for summarised data from a MinION sequencing run |