add.row.to.meta | add.row.to.meta |
add.row.to.meta-method | add.row.to.meta |
automatic.COTAN.object.creation | automatic.COTAN.object.creation |
automatic.COTAN.object.creation-method | automatic.COTAN.object.creation |
clean | clean |
clean-method | clean |
cotan_analysis | cotan_analysis |
cotan_analysis-method | cotan_analysis |
drop.genes.cells | drop.genes.cells |
drop.genes.cells-method | drop.genes.cells |
ERCC.cotan | COTAN object |
ERCCraw | Raw ERCC dataset |
est.min.parameters | est.min.parameters |
est.min.parameters-method | est.min.parameters |
extract.coex | extract.coex |
extract.coex-method | extract.coex |
fun_linear | fun_linear |
get.a | get.a |
get.a-method | get.a |
get.cell.number | get.cell.number |
get.cell.number-method | get.cell.number |
get.cell.size | get.cell.size |
get.cell.size-method | get.cell.size |
get.coex | get.coex |
get.coex-method | get.coex |
get.constitutive.genes | get.constitutive.genes This function return the genes expressed in all cells in the dataset. |
get.constitutive.genes-method | get.constitutive.genes This function return the genes expressed in all cells in the dataset. |
get.expected.ct | get.expected.ct |
get.expected.ct-method | get.expected.ct |
get.GDI | get.GDI |
get.GDI-method | get.GDI |
get.gene.coexpression.space | get.gene.coexpression.space |
get.gene.coexpression.space-method | get.gene.coexpression.space |
get.genes | get.genes |
get.genes-method | get.genes |
get.lambda | get.lambda |
get.lambda-method | get.lambda |
get.metadata | get.metadata |
get.metadata-method | get.metadata |
get.normdata | get.normdata |
get.normdata-method | get.normdata |
get.nu | get.nu |
get.nu-method | get.nu |
get.observed.ct | get.observed.ct |
get.observed.ct-method | get.observed.ct |
get.pval | get.pval |
get.pval-method | get.pval |
get.rawdata | get.rawdata |
get.rawdata-method | get.rawdata |
get.subset | get.subset |
get.subset-method | get.subset |
initRaw | initRaw |
initRaw-method | initRaw |
mat2vec_rfast | mat2vec_rfast |
mat2vec_rfast-method | mat2vec_rfast |
plot_GDI | plot_GDI |
plot_GDI-method | plot_GDI |
plot_general.heatmap | plot_general.heatmap |
plot_general.heatmap-method | plot_general.heatmap |
plot_heatmap | plot_heatmap |
plot_heatmap-method | plot_heatmap |
raw.dataset | Raw sample dataset |
scCOTAN | scCOTAN-class |
scCOTAN-class | scCOTAN-class |
vec2mat_rfast | vec2mat_rfast |
vec2mat_rfast-method | vec2mat_rfast |