Toolbox for mRNA epigenetics sequencing analysis


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Documentation for package ‘TRESS’ version 1.0.0

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Basal Bin-level and region-level data from basal mouse brain samples
CallCandidates Call candidate m6A regions or candidate differential m6A regions.
CallPeaks.multiRep m6A peak calling with multiple replicates.
CallPeaks.oneRep m6A peak calling with only one replicate.
CallPeaks.paramEsti Parameter estimation in m6A peak calling with multiple replicates.
DivideBins Obtain genomic bins and bin-level read counts from BAM files.
EstiMu Estimation of m6A methylation.
EstiPhi Dispersion estimation.
findBumps Bump-finding from transcriptome bins.
ShowOnePeak Visulization of a single peak along the genome.
TRESS_peak Detecting m6A methylation regions from Methylated RNA Immunoprecipitation Sequencing.