Differential pattern analysis for Ribo-seq data


[Up] [Top]

Documentation for package ‘RiboDiPA’ version 1.2.0

Help Pages

data.binned An example of binned P-sites data
data.psite An example of P-site coverage data
dataBinning Data binning
diffPatternTest Differential pattern analysis of Ribo-seq data
diffPatternTestExon Main function for differential pattern analysis of exon-binned Ribo-seq data
normFactor Size factors for normalization by sequencing depth
plotTest Plotting ribosome footprint data from mapped P-sites at the bin level.
plotTrack Plotting ribosome footprint data at the mapped P-site level
psiteCal P-site position of reads
psiteMapping P-site mapping
result.pst An example of differential pattern analysis result
RiboDiPA A wrapper function for the RiboDiPA pipeline